![]() ![]() ![]() Right-clicking on a node or edge will open a menu which should contain an option called "LinkOut to EVEX". Good way to start visualizing your network is to select the new nodes and applying Grid Layout on them. Select the node (or a small set of nodes) you wish to expand and choose Plugins -> CyEVEX -> Expand nodes with EVEX data.Īfter the search is completed, you should see a new set of nodes and edges on your network.ĬyEVEX plugin does not change the layout of your network and thus all new nodes will be created to the Cytoscape default spot. New edges should now be visible on your network. Entrez Gene ID Field has to be mapped to the node attribute containing the Entrez Gene IDs.Īfter a short period of time you should see an info box stating that the search has completed. Select the nodes you want to include in the search and choose Plugins -> CyEVEX -> Search edges from EVEX from the menu.Ĭhoose the options you want to use and click OK. A new submenu called CyEVEX should appear under the Plugins menu. jar file and place it into the plugins folder of your Cytoscape installation. Or expanding a network with the interaction partners of a given gene.ĬyEVEX is distributed as a Java archive which can be downloaded from here: CyEVEX_v0.1.1.jar.ĬyEVEX plugin has been tested on Cytoscape version 2.8.3.ĭownload the CyEVEX. The plugin enables searching of pairwise interactions for a set of genes CyEVEX is a Cytoscape plugin designed for retrieving gene interactions from EVEX. ![]()
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